training.nextflow.io
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Environment setup
Environment setup
Environment Setup
GitHub Codespaces
Local installation
Hello Nextflow
Hello Nextflow
Hello Nextflow
Orientation
Part 1: Hello World
Part 2: Hello Channels
Part 3: Hello Workflow
Part 4: Hello Modules
Part 5: Hello Containers
Part 6: Hello Config
Feedback survey
Next Steps
Nextflow for Genomics
Nextflow for Genomics
Nextflow for Genomics
Orientation
Part 1: Per-sample variant calling
Part 2: Joint calling on a cohort
Part 3: Moving code into modules
Part 4: Adding tests
Nextflow for RNAseq
Nextflow for RNAseq
Nextflow for RNAseq
Orientation
Part 1: Method overview and manual testing
Part 2: Single-sample implementation
Part 3: Multi-sample paired-end implementation
Feedback survey
Next Steps
Side Quests
Side Quests
Side Quests
Orientation
Introduction to nf-core
Testing with nf-test
Workflows of Workflows
Fundamentals Training
Fundamentals Training
Fundamentals Training
Orientation
Basic concepts
Simple RNA-Seq workflow
Dependencies and containers
Channels
Processes
Operators
Groovy introduction
Modularization
Configuration
Deployment scenarios
Seqera Platform
Cache and resume
Troubleshooting
Advanced Training
Advanced Training
Advanced Training
Orientation
Operator Tour
Metadata Propagation
Grouping and Splitting
Groovy Imports
Workflow Structure
Configuration
Summary
Support
Resources
Nextflow Docs
Nextflow Slack
Nextflow Homepage
Seqera
Training on GitHub
20.
Summary
Summary available on day #2
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