1. Orientation¶
The Gitpod environment contains some test data that will be used in this workshop.
Note
Follow this link if you have not yet setup your Gitpod environment.
1.1 Getting started¶
You will complete this module in the nf-develop folder.
This is an empty directory where you will create an launch your pipeline.
Exercise
Open the Gitpod training environment and use the following command to switch to the empty nf-develop folder:
1.2 Configuring GitHub¶
As a part of this workshop you will push changes to your GitHub.
If this is the first time you have used Gitpod for development work you will need to edit your permissions to push changes.
To edit your Gitpod permissions, open your Gitpod dashboard by clicking on the three horizontal lines in the top left-hand corner of your browser window and select Gitpod: Open Dashboard from the dropdown menu.
In your dashboard, click on your avatar in the top right-hand corner of your window and select User Settings from the dropdown menu.
Click on Git Providers on the right hand menu.
Edit the permissions for your GitHub account by clicking on the three dots next to your GitHub account and give your Gitpod account permissions to access for GitHub repositories.
Once complete, click Update permissions and return reopen your Gitpod training environment.
Congratulations! You are now ready to start the workshop!